Personally, I like to follow how they were placed in the video games. But yeah, I know of no rule that states you HAVE to pay attention to where you play your cards, since only a handfull of cards even use that as a factor.
Field Monster 1 Monster 2 Monster 3 Monster 4 Monster 5 Graveyard
Fusion M/T 1 M/T 2 M/T 3 M/T 4 M/T 5 Deck Removed from play